Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GMEB2 | usp40 | ENSDARP00000116102 | ENSDARP00000095869 | Si:ch73-302a13.2. | Ubiquitin-specific peptidase 40; Belongs to the peptidase C19 family. | 0.865 |
anapc11 | rps27a | ENSDARP00000130416 | ENSDARP00000128775 | APC11 anaphase-promoting complex subunit 11 homolog (yeast). | Ribosomal protein S27a. | 0.612 |
anapc11 | usp40 | ENSDARP00000130416 | ENSDARP00000095869 | APC11 anaphase-promoting complex subunit 11 homolog (yeast). | Ubiquitin-specific peptidase 40; Belongs to the peptidase C19 family. | 0.813 |
dnmt1 | rps27a | ENSDARP00000013243 | ENSDARP00000128775 | DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | Ribosomal protein S27a. | 0.879 |
dnmt1 | tp53 | ENSDARP00000013243 | ENSDARP00000116736 | DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of bax and fas antigen expression, or by repression of Bcl-2 expression. | 0.920 |
dnmt1 | uba52 | ENSDARP00000013243 | ENSDARP00000060744 | DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | Ubiquitin A-52 residue ribosomal protein fusion product 1. | 0.873 |
dnmt1 | usp40 | ENSDARP00000013243 | ENSDARP00000095869 | DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | Ubiquitin-specific peptidase 40; Belongs to the peptidase C19 family. | 0.806 |
gmeb1 | usp24 | ENSDARP00000125781 | ENSDARP00000115893 | Glucocorticoid modulatory element-binding protein 1. | Ubiquitin-specific peptidase 24. | 0.570 |
gmeb1 | usp40 | ENSDARP00000125781 | ENSDARP00000095869 | Glucocorticoid modulatory element-binding protein 1. | Ubiquitin-specific peptidase 40; Belongs to the peptidase C19 family. | 0.857 |
gmps | usp40 | ENSDARP00000097707 | ENSDARP00000095869 | Guanine monophosphate synthase. | Ubiquitin-specific peptidase 40; Belongs to the peptidase C19 family. | 0.876 |
rps27a | anapc11 | ENSDARP00000128775 | ENSDARP00000130416 | Ribosomal protein S27a. | APC11 anaphase-promoting complex subunit 11 homolog (yeast). | 0.612 |
rps27a | dnmt1 | ENSDARP00000128775 | ENSDARP00000013243 | Ribosomal protein S27a. | DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | 0.879 |
rps27a | tp53 | ENSDARP00000128775 | ENSDARP00000116736 | Ribosomal protein S27a. | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of bax and fas antigen expression, or by repression of Bcl-2 expression. | 0.927 |
rps27a | trip12 | ENSDARP00000128775 | ENSDARP00000082000 | Ribosomal protein S27a. | E3 ubiquitin-protein ligase TRIP12; E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spr [...] | 0.685 |
rps27a | uba52 | ENSDARP00000128775 | ENSDARP00000060744 | Ribosomal protein S27a. | Ubiquitin A-52 residue ribosomal protein fusion product 1. | 0.999 |
rps27a | usp40 | ENSDARP00000128775 | ENSDARP00000095869 | Ribosomal protein S27a. | Ubiquitin-specific peptidase 40; Belongs to the peptidase C19 family. | 0.795 |
tp53 | dnmt1 | ENSDARP00000116736 | ENSDARP00000013243 | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of bax and fas antigen expression, or by repression of Bcl-2 expression. | DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | 0.920 |
tp53 | rps27a | ENSDARP00000116736 | ENSDARP00000128775 | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of bax and fas antigen expression, or by repression of Bcl-2 expression. | Ribosomal protein S27a. | 0.927 |
tp53 | usp24 | ENSDARP00000116736 | ENSDARP00000115893 | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of bax and fas antigen expression, or by repression of Bcl-2 expression. | Ubiquitin-specific peptidase 24. | 0.562 |
tp53 | usp40 | ENSDARP00000116736 | ENSDARP00000095869 | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of bax and fas antigen expression, or by repression of Bcl-2 expression. | Ubiquitin-specific peptidase 40; Belongs to the peptidase C19 family. | 0.797 |
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