STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gbx1Gastrulation brain homeobox 1. (316 aa)    
Predicted Functional Partners:
lmo4b
LIM domain only 4, like.
    
 
 0.809
sox4a-2
SRY-box transcription factor 4a.
   
 
 0.577
zfhx4
Zinc finger homeobox 4.
      
 0.559
Q1LXF6_DANRE
Si:ch211-222k6.2.
    
 
 0.483
zfp36l1b
Zinc finger protein 36, C3H type-like 1 like.
      
 0.479
pou3f3b
POU domain, class 3, transcription factor 3-B; Transcription factor that may play important roles in patterning the embryonic brain.
   
 
 0.469
lhx8a
LIM homeobox 8a.
    
 
 0.420
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.