STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc59Leucine-rich repeat-containing protein 59; Required for nuclear import of FGF1. (314 aa)    
Predicted Functional Partners:
tpra
Translocated promoter region a, nuclear basket protein.
    
 
 0.683
tprb
Translocated promoter region b, nuclear basket protein.
    
 
 0.665
stx10
Syntaxin 10.
      
 0.665
LOC110440104
Syntaxin 10.
      
 0.665
bcap31
Novel protein similar to vertebrate caldesmon 1 (CALD1).
   
  
 0.652
histh1l
Histone H1-like.
      
 0.626
tmx1
Thioredoxin-related transmembrane protein 1.
   
 
 0.615
calua
Calumenin-A; Involved in regulation of vitamin K-dependent carboxylation of multiple N-terminal glutamate residues. Seems to inhibit gamma- carboxylase ggcx. Binds 7 calcium ions with a low affinity (By similarity).
   
 
 0.590
tmed10
Transmembrane emp24-like trafficking protein 10 (Yeast).
   
 
 0.584
grwd1
Glutamate-rich WD repeat-containing 1.
   
  
 0.583
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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