STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmtk2Lemur tyrosine kinase 2. (1446 aa)    
Predicted Functional Partners:
grxcr1a
Glutaredoxin and cysteine-rich domain-containing 1 a.
      
 0.838
ccdc9
Coiled-coil domain-containing 9.
      
 0.670
osbpl10b
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.670
dcaf6
Ddb1 and cul4-associated factor 6.
      
 0.647
arl6ip5a
PRA1 family protein.
      
 0.589
atad1b
ATPase family AAA domain-containing protein 1-B; ATPase that plays a critical role in regulating the surface expression of AMPA receptors (AMPAR). Required for NMDA-stimulated AMPAR internalization in an ATPase-dependent manner (By similarity).
      
 0.580
nhsl1b
NHS-like 1b.
      
 0.565
myo1ca
Unconventional myosin-Ic; Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments (By similarity).
    
 
 0.541
dnah3
Dynein axonemal heavy chain 3.
      
 0.540
bhlha15
Basic helix-loop-helix family, member a15.
      
 0.520
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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