STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soul5Heme-binding protein soul5. (216 aa)    
Predicted Functional Partners:
ms4a17a.11
Membrane-spanning 4-domains, subfamily A, member 17A.11.
      
 0.860
si:dkey-14d8.6
Si:dkey-14d8.6 protein.
      
 0.807
bcl2l1
Bcl-XL-like protein 1.
   
 
 0.714
colgalt1
Procollagen galactosyltransferase 1.
      
 0.667
colgalt1-2
Procollagen galactosyltransferase 1; Beta-galactosyltransferase that transfers beta-galactose to hydroxylysine residues of type I collagen. By acting on collagen glycosylation, facilitates the formation of collagen triple helix.
      
 0.647
atp1a1a.3
Sodium/potassium-transporting ATPase subunit alpha.
      
 0.646
trim45
Tripartite motif-containing 45.
      
 0.601
pdcd6
Programmed cell death 6.
    
 
 0.567
pef1
Peflin; Calcium-binding protein that acts as an adapter that bridges unrelated proteins or stabilizes weak protein-protein complexes in response to calcium. Acts as a negative regulator of ER-Golgi transport (By similarity).
    
 
 0.567
blvrb
Biliverdin reductase B.
   
  
 0.548
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.