STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
polnPolymerase (DNA directed) nu. (1146 aa)    
Predicted Functional Partners:
helq
Helicase, POLQ-like.
 
  
 
 0.985
haus3
Augmin-like complex subunit 3-like protein beta.
 
 
  
 0.863
ascc3
Activating signal cointegrator 1 complex subunit 3; 3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for alkbh3, enabling alkbh3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions.
      
 0.837
fancd2
FA complementation group D2.
   
 0.789
poli
Polymerase (DNA directed) iota.
  
 
 0.735
neil3
Nei-like DNA glycosylase 3.
  
  
 0.703
rev3l
REV3-like, DNA directed polymerase zeta catalytic subunit.
   
 
 0.677
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
      
 0.676
ercc4
Excision repair cross-complementation group 4.
   
 
 0.654
fanci
FA complementation group I.
   
 0.643
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.