STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crygm2d16Crystallin, gamma M2d16; Belongs to the beta/gamma-crystallin family. (175 aa)    
Predicted Functional Partners:
ca15c
Carbonic anhydrase XV c; Belongs to the alpha-carbonic anhydrase family.
      
 0.832
guca1g
Guanylate cyclase activator 1g.
      
 0.807
impg2b
Interphotoreceptor matrix proteoglycan 2b.
      
 0.806
guca1d
Guanylate cyclase activating protein 4.
      
 0.665
slc24a2
Solute carrier family 24 member 2; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
      
 0.650
gjd2b
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.645
guca1b
Guanylate cyclase-activating protein 2.
      
 0.567
rgs9a
Regulator of G protein-signaling 9a.
      
 0.561
guca1a
Guanylate cyclase activator 1A.
      
 0.558
pde6ha
Phosphodiesterase 6H, cGMP-specific, cone, gamma, paralog a.
      
 0.556
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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