STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrig3Leucine-rich repeats and immunoglobulin-like domains 3. (698 aa)    
Predicted Functional Partners:
cmtm7
CKLF-like MARVEL transmembrane domain-containing 7.
      
 0.807
usp3
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.802
cnpy3
Protein canopy homolog 3; Toll-like receptor (TLR)-specific co-chaperone for HSP90B1. Required for proper TLR folding and hence controls TLR exit from the endoplasmic reticulum. Consequently, required for immune responses (By similarity).
    
 
 0.754
arsk
Arylsulfatase K.
   
  
 0.742
cnpy4
Protein canopy 4; Belongs to the canopy family.
    
 
 0.680
ntn1b
Netrin 1b.
    
 
 0.607
chst10
Carbohydrate sulfotransferase 10; Catalyzes the transfer of sulfate to position 3 of terminal glucuronic acid of both protein- and lipid-linked oligosaccharides. Participates in biosynthesis of HNK-1 carbohydrate structure, a sulfated glucuronyl-lactosaminyl residue carried by many neural recognition molecules; Belongs to the sulfotransferase 2 family.
      
 0.586
mcm8
Minichromosome maintenance 8 homologous recombination repair factor; Belongs to the MCM family.
   
 
 0.576
ntn2
Netrin 2.
    
 
 0.568
ntn1a
Netrin-1a.
    
 
 0.565
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.