STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcf25Transcription factor 25 (basic helix-loop-helix). (650 aa)    
Predicted Functional Partners:
LTN1
Si:dkey-175g6.5.
   
 0.923
LOC108182745
NFACT-R_1 domain-containing protein.
    
 0.919
khdrbs1b
KH domain-containing, RNA-binding, signal transduction-associated 1b.
      
 0.833
def8
Differentially-expressed in FDCP 8 homolog.
 
 
  
 0.806
mthfsd
Methenyltetrahydrofolate synthase domain-containing protein.
   
  
 0.765
h6pd
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
   
  
 0.720
ankzf1
Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.
   
 
 0.703
ufd1l
Ubiquitin recognition factor in ER-associated degradation 1.
    
 
 0.698
golga3
Golgin A3.
   
  
 0.694
rngtt
Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the GMP moiety of GTP to the 5'-diphosphate terminus (By similarity).
      
 0.672
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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