STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc24Zinc finger, CCHC domain-containing 24. (238 aa)    
Predicted Functional Partners:
srpx
Sushi-repeat-containing protein X-linked.
   
  
 0.708
clip3
CAP-GLY domain-containing linker protein 3.
      
 0.690
hapln3
Hyaluronan and proteoglycan link protein 3.
   
  
 0.646
SPAG9
Sperm associated antigen 9.
      
 0.646
ckba
Creatine kinase, brain a; Belongs to the ATP:guanido phosphotransferase family.
      
 0.644
arrdc2
Arrestin domain-containing 2.
      
 0.638
ssbp3a
Single stranded DNA-binding protein 3a.
      
 0.630
B8A638_DANRE
Si:dkey-9i23.15.
      
 0.602
mbnl2
Muscleblind-like-splicing regulator 2.
   
  
 0.566
fam126a
Hyccin; Component of a complex required to localize phosphatidylinositol 4-kinase (PI4K) to the plasma membrane. The complex acts as a regulator of phosphatidylinositol 4-phosphate (PtdIns(4)P) synthesis.
   
  
 0.565
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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