STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl5bRibosomal protein L5b. (296 aa)    
Predicted Functional Partners:
rpl3
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.999
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.999
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.999
rpl27
60S ribosomal protein L27; Component of the large ribosomal subunit.
  
 
 0.999
rpl18
Ribosomal protein L18.
  
 
 0.999
rps10
Ribosomal protein S10.
   
 
 0.999
rps19
Ribosomal protein S19.
   
 
 0.999
rps13
Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
 
 0.999
rps14
Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
  
 
 0.999
rpl4
Ribosomal protein L4.
  
 
 0.999
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.