STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phf23bPHD finger protein 23B; Acts as a negative regulator of autophagy. (315 aa)    
Predicted Functional Partners:
mcrs1
Microspherule protein 1.
   
 
 0.615
kansl3
KAT8 regulatory NSL complex subunit 3; As part of the NSL complex it is involved in acetylation of nucleosomal histone H4 on several lysine residues and therefore may be involved in the regulation of transcription.
   
 
 0.512
tex30
Testis-expressed 30.
    
 
 0.511
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 
 0.505
suds3
Suppressor of defective silencing 3 homolog (SDS3, S. cerevisiae).
   
 
 0.498
arid4a
AT-rich interactive domain 4A (RBP1-like).
   
 
 0.493
arid4b
Translocase of outer mitochondrial membrane 20.
   
 
 0.493
brms1la
Breast cancer metastasis-suppressor 1-like protein-A; Involved in the histone deacetylase (HDAC1)-dependent transcriptional repression activity; Belongs to the BRMS1 family.
    
 
 0.411
brms1lb
BRMS1-like transcriptional repressor b.
    
 
 0.411
brms1
BRMS1 transcriptional repressor and anoikis regulator.
    
 
 0.411
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.