Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LHX3 | gata2a | ENSDARP00000087936 | ENSDARP00000076860 | LIM/homeobox protein Lhx3. | GATA-binding protein 2a. | 0.449 |
LHX3 | ldb1a | ENSDARP00000087936 | ENSDARP00000003158 | LIM/homeobox protein Lhx3. | LIM domain-binding protein 1-A; Binds to the LIM domain of a wide variety of LIM domain- containing transcription factors. | 0.727 |
Lyl1 | gata1a | ENSDARP00000156332 | ENSDARP00000002330 | BHLH domain-containing protein. | GATA-binding protein 1a. | 0.717 |
Lyl1 | gata2a | ENSDARP00000156332 | ENSDARP00000076860 | BHLH domain-containing protein. | GATA-binding protein 2a. | 0.852 |
Lyl1 | ldb1a | ENSDARP00000156332 | ENSDARP00000003158 | BHLH domain-containing protein. | LIM domain-binding protein 1-A; Binds to the LIM domain of a wide variety of LIM domain- containing transcription factors. | 0.730 |
Lyl1 | lmo1 | ENSDARP00000156332 | ENSDARP00000135314 | BHLH domain-containing protein. | Rhombotin-1; May be involved in gene regulation within neural lineage cells potentially by direct DNA binding or by binding to other transcription factors. | 0.755 |
Lyl1 | lmo2 | ENSDARP00000156332 | ENSDARP00000115969 | BHLH domain-containing protein. | Rhombotin-2; Transcription factor that acts synergistically with tal1/scl in primitive and definitive hematopoiesis, and in endothelial development. Specifies mesodermal precursors to a hemangioblast cell fate. Hemangioblasts are bipotential precursors of blood and endothelium, and in the absence of hematopoietic induction cues such as gata1, tal1/scl-lmo2-induced haemangioblasts differentiate into endothelial cells. | 0.985 |
Lyl1 | tal1 | ENSDARP00000156332 | ENSDARP00000077498 | BHLH domain-containing protein. | T-cell acute lymphocytic leukemia protein 1 homolog; Transcription factor that plays a pivotal role in hemopoietic and endothelial development, acting synergistically with lmo2 and downstream of clo. Specifies mesodermal precursors to a hemangioblast cell fate. Hemangioblasts are bipotential precursors of blood and endothelium, and in the absence of hemopoietic induction cues such as gata1, tal1/scl-lmo2-induced hemangioblasts differentiate into endothelial cells. Isoform alpha and isoform beta are redundant for the initiation of primitive hemopoiesis but have distinct roles in the reg [...] | 0.488 |
gata1a | Lyl1 | ENSDARP00000002330 | ENSDARP00000156332 | GATA-binding protein 1a. | BHLH domain-containing protein. | 0.717 |
gata1a | gata2a | ENSDARP00000002330 | ENSDARP00000076860 | GATA-binding protein 1a. | GATA-binding protein 2a. | 0.842 |
gata1a | ldb1a | ENSDARP00000002330 | ENSDARP00000003158 | GATA-binding protein 1a. | LIM domain-binding protein 1-A; Binds to the LIM domain of a wide variety of LIM domain- containing transcription factors. | 0.671 |
gata1a | lmo1 | ENSDARP00000002330 | ENSDARP00000135314 | GATA-binding protein 1a. | Rhombotin-1; May be involved in gene regulation within neural lineage cells potentially by direct DNA binding or by binding to other transcription factors. | 0.794 |
gata1a | lmo2 | ENSDARP00000002330 | ENSDARP00000115969 | GATA-binding protein 1a. | Rhombotin-2; Transcription factor that acts synergistically with tal1/scl in primitive and definitive hematopoiesis, and in endothelial development. Specifies mesodermal precursors to a hemangioblast cell fate. Hemangioblasts are bipotential precursors of blood and endothelium, and in the absence of hematopoietic induction cues such as gata1, tal1/scl-lmo2-induced haemangioblasts differentiate into endothelial cells. | 0.999 |
gata1a | tal1 | ENSDARP00000002330 | ENSDARP00000077498 | GATA-binding protein 1a. | T-cell acute lymphocytic leukemia protein 1 homolog; Transcription factor that plays a pivotal role in hemopoietic and endothelial development, acting synergistically with lmo2 and downstream of clo. Specifies mesodermal precursors to a hemangioblast cell fate. Hemangioblasts are bipotential precursors of blood and endothelium, and in the absence of hemopoietic induction cues such as gata1, tal1/scl-lmo2-induced hemangioblasts differentiate into endothelial cells. Isoform alpha and isoform beta are redundant for the initiation of primitive hemopoiesis but have distinct roles in the reg [...] | 0.999 |
gata1b | ldb1a | ENSDARP00000076594 | ENSDARP00000003158 | GATA-binding protein 1b. | LIM domain-binding protein 1-A; Binds to the LIM domain of a wide variety of LIM domain- containing transcription factors. | 0.685 |
gata1b | lmo2 | ENSDARP00000076594 | ENSDARP00000115969 | GATA-binding protein 1b. | Rhombotin-2; Transcription factor that acts synergistically with tal1/scl in primitive and definitive hematopoiesis, and in endothelial development. Specifies mesodermal precursors to a hemangioblast cell fate. Hemangioblasts are bipotential precursors of blood and endothelium, and in the absence of hematopoietic induction cues such as gata1, tal1/scl-lmo2-induced haemangioblasts differentiate into endothelial cells. | 0.898 |
gata1b | tal1 | ENSDARP00000076594 | ENSDARP00000077498 | GATA-binding protein 1b. | T-cell acute lymphocytic leukemia protein 1 homolog; Transcription factor that plays a pivotal role in hemopoietic and endothelial development, acting synergistically with lmo2 and downstream of clo. Specifies mesodermal precursors to a hemangioblast cell fate. Hemangioblasts are bipotential precursors of blood and endothelium, and in the absence of hemopoietic induction cues such as gata1, tal1/scl-lmo2-induced hemangioblasts differentiate into endothelial cells. Isoform alpha and isoform beta are redundant for the initiation of primitive hemopoiesis but have distinct roles in the reg [...] | 0.842 |
gata2a | LHX3 | ENSDARP00000076860 | ENSDARP00000087936 | GATA-binding protein 2a. | LIM/homeobox protein Lhx3. | 0.449 |
gata2a | Lyl1 | ENSDARP00000076860 | ENSDARP00000156332 | GATA-binding protein 2a. | BHLH domain-containing protein. | 0.852 |
gata2a | gata1a | ENSDARP00000076860 | ENSDARP00000002330 | GATA-binding protein 2a. | GATA-binding protein 1a. | 0.842 |
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