STRINGSTRING
ext1b protein (Danio rerio) - STRING interaction network
"ext1b" - Exostosin-1b in Danio rerio
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ext1bExostosin-1b; Glycosyltransferase required for the biosynthesis of heparan-sulfate (426 aa)    
Predicted Functional Partners:
ext1c
Exostosin-1c; Glycosyltransferase required for the biosynthesis of heparan-sulfate (313 aa)
 
       
  0.943
ext2
Exostosin glycosyltransferase 2; Exostoses (multiple) 2 (719 aa)
     
0.939
hspg2
Heparan sulfate proteoglycan 2 (3422 aa)
     
 
  0.936
sdc2
Syndecan; Cell surface proteoglycan (208 aa)
     
 
  0.932
gpc6a
Glypican 6a; Cell surface proteoglycan that bears heparan sulfate (197 aa)
     
 
  0.926
Gpc6b
Glypican 6b; Cell surface proteoglycan that bears heparan sulfate (499 aa)
     
 
  0.926
gpc4
Glypican 4; Cell surface proteoglycan that bears heparan sulfate (557 aa)
     
 
  0.926
GPC5
Glypican 5a; Cell surface proteoglycan that bears heparan sulfate (268 aa)
     
 
  0.916
gpc3
Glypican 3; Cell surface proteoglycan that bears heparan sulfate (507 aa)
     
 
  0.916
gpc1b
Glypican 1b; Cell surface proteoglycan that bears heparan sulfate (312 aa)
     
 
  0.916
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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