STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim8aTripartite motif-containing 8a. (567 aa)    
Predicted Functional Partners:
sycp1
Synaptonemal complex protein 1.
    
 
 0.728
trim33l
Tripartite motif-containing 33,-like.
    
 
 0.651
adarb1b
Adenosine deaminase RNA-specific B1b.
      
 0.649
ccl35.1
Chemokine (C-C motif) ligand 35, duplicate 1.
      
 0.649
trim45
Tripartite motif-containing 45.
      
 0.644
ccr6b
Chemokine (C-C motif) receptor 6b.
      
 0.617
socs1a
Suppressor of cytokine-signaling 1a.
    
 
 0.593
mov10a
Mov10 RISC complex RNA helicase a.
      
 0.592
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
      
 0.580
mov10b.2
Putative helicase mov-10-B.2; Probable RNA helicase. Required for RNA-mediated gene silencing by the RNA-induced silencing complex (RISC). Required for both miRNA-mediated translational repression and miRNA-mediated cleavage of complementary mRNAs by RISC (By similarity).
      
 0.574
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.