STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lzicProtein LZIC; Required for neuronal survival during early development. (190 aa)    
Predicted Functional Partners:
gpr157
G protein-coupled receptor 157.
    
 
 0.837
ctnnbip1
Catenin, beta-interacting protein 1.
   
  
 0.742
dctpp1
dCTP pyrophosphatase 1; Hydrolyzes deoxynucleoside triphosphates (dNTPs) to the corresponding nucleoside monophosphates. Has a strong preference for dCTP and its analogs including 5-iodo-dCTP and 5-methyl-dCTP for which it may even have a higher efficiency. May protect DNA or RNA against the incorporation of these genotoxic nucleotide analogs through their catabolism.
   
 
 0.707
h6pd
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
      
 0.669
nmnat1
Nicotinamide-nucleotide adenylyltransferase.
   
  
 0.599
dhrs4
Dehydrogenase/reductase (SDR family) member 4.
   
 
 0.583
clstn1
Calsyntenin 1.
 
    
 0.574
tmem144a
Transmembrane protein 144a.
   
  
 0.571
kti12
Protein KTI12 homolog; Belongs to the KTI12 family.
   
  
 0.564
HUS1B
Checkpoint protein; Belongs to the HUS1 family.
   
  
 0.491
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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