STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGRNNeugrin, neurite outgrowth associated (289 aa)    
Predicted Functional Partners:
nrgna
Neurogranin (protein kinase C substrate, RC3) a
      
 0.788
fastkd2
FAST kinase domains 2
    
 
 0.743
PUSL1
tRNA pseudouridine synthase; Pseudouridylate synthase-like 1
      
 0.716
trub2
TruB pseudouridine (psi) synthase homolog 2 (E. coli)
    
 
 0.646
rpusd4
Mitochondrial RNA pseudouridine synthase rpusd4; Converts specific uridines to pseudouridine (PSI) in different mitochondrial RNA substrates. Acts on 16S mitochondrial ribosomal RNA (16S mt-rRNA). This modification is required for the assembly of 16S mt-rRNA into a functional mitochondrial ribosome. Acts on mitochondrial tRNA(Phe)
    
 
 0.635
wbscr16
RCC1-like; Williams-Beuren syndrome chromosome region 16 homolog (human)
   
 
 0.624
rpl17
Ribosomal protein L17; Chromosome 18 open reading frame 32; Belongs to the universal ribosomal protein uL22 family
      
 0.607
ctnna2
Catenin alpha-2; May function as a linker between cadherin adhesion receptors and the cytoskeleton to regulate cell-cell adhesion and differentiation in the nervous system
   
  
 0.588
pus1
Pseudouridine synthase 1
      
 0.553
chn1
Chn1 protein; Chimerin (chimaerin) 1
      
 0.536
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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