STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
myo16Myosin XVI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1471 aa)    
Predicted Functional Partners:
slc66a3
Solute carrier family 66 member 3.
      
 0.813
cx28.9
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.743
snx27a
Sorting nexin 27a.
      
 0.743
tjp3
Tight junction protein 3; Belongs to the MAGUK family.
    
 
 0.740
ntrk3b
Tyrosine-protein kinase receptor.
    
 0.659
ntrk3a
Tyrosine-protein kinase receptor.
    
 0.653
map2k4b
Mitogen-activated protein kinase kinase 4B; Belongs to the protein kinase superfamily.
      
 0.628
slc6a22.1
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
      
 0.625
ntrk2b
Tyrosine-protein kinase receptor.
    
 0.604
ntrk2a
Tyrosine-protein kinase receptor.
    
 0.603
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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