Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
E9QDR5_DANRE | ENSDARP00000146121 | ENSDARP00000117734 | ENSDARP00000146121 | Si:dkey-157g16.6. | Ig-like domain-containing protein. | 0.489 |
E9QDR5_DANRE | chmp3 | ENSDARP00000117734 | ENSDARP00000055486 | Si:dkey-157g16.6. | Charged multivesicular body protein 3; Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Involved in late stages of cytokinesis. Plays a role in en [...] | 0.554 |
E9QDR5_DANRE | faap100 | ENSDARP00000117734 | ENSDARP00000127337 | Si:dkey-157g16.6. | Si:dkey-57h18.1. | 0.516 |
E9QDR5_DANRE | ist1 | ENSDARP00000117734 | ENSDARP00000068086 | Si:dkey-157g16.6. | IST1 factor-associated with ESCRT-III. | 0.607 |
E9QDR5_DANRE | nploc4 | ENSDARP00000117734 | ENSDARP00000133068 | Si:dkey-157g16.6. | Nuclear protein localization 4 homolog (S. cerevisiae). | 0.516 |
E9QDR5_DANRE | plaa | ENSDARP00000117734 | ENSDARP00000062703 | Si:dkey-157g16.6. | Phospholipase A2-activating protein. | 0.575 |
E9QDR5_DANRE | ubxn1 | ENSDARP00000117734 | ENSDARP00000108064 | Si:dkey-157g16.6. | UBX domain-containing protein 1; Ubiquitin-binding protein that specifically binds 'Lys-6'- linked polyubiquitin chains. Component of a complex required to couple deglycosylation and proteasome-mediated degradation of misfolded proteins in the endoplasmic reticulum that are retrotranslocated in the cytosol. Involved in ubiquitin-proteasome systems (By similarity). | 0.515 |
E9QDR5_DANRE | ubxn7 | ENSDARP00000117734 | ENSDARP00000012036 | Si:dkey-157g16.6. | UBX domain protein 7. | 0.872 |
E9QDR5_DANRE | ufd1l | ENSDARP00000117734 | ENSDARP00000035108 | Si:dkey-157g16.6. | Ubiquitin recognition factor in ER-associated degradation 1. | 0.570 |
E9QDR5_DANRE | yod1 | ENSDARP00000117734 | ENSDARP00000003565 | Si:dkey-157g16.6. | Ubiquitin thioesterase OTU1; Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of 'Lys-27'-, 'Lys-29'- and 'Lys-33'-linked polyubiquitin chains. A [...] | 0.515 |
ENSDARP00000146121 | E9QDR5_DANRE | ENSDARP00000146121 | ENSDARP00000117734 | Ig-like domain-containing protein. | Si:dkey-157g16.6. | 0.489 |
chmp3 | E9QDR5_DANRE | ENSDARP00000055486 | ENSDARP00000117734 | Charged multivesicular body protein 3; Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Involved in late stages of cytokinesis. Plays a role in en [...] | Si:dkey-157g16.6. | 0.554 |
chmp3 | ist1 | ENSDARP00000055486 | ENSDARP00000068086 | Charged multivesicular body protein 3; Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Involved in late stages of cytokinesis. Plays a role in en [...] | IST1 factor-associated with ESCRT-III. | 0.973 |
faap100 | E9QDR5_DANRE | ENSDARP00000127337 | ENSDARP00000117734 | Si:dkey-57h18.1. | Si:dkey-157g16.6. | 0.516 |
faap100 | plaa | ENSDARP00000127337 | ENSDARP00000062703 | Si:dkey-57h18.1. | Phospholipase A2-activating protein. | 0.935 |
faap100 | ubxn7 | ENSDARP00000127337 | ENSDARP00000012036 | Si:dkey-57h18.1. | UBX domain protein 7. | 0.996 |
faap100 | ufd1l | ENSDARP00000127337 | ENSDARP00000035108 | Si:dkey-57h18.1. | Ubiquitin recognition factor in ER-associated degradation 1. | 0.942 |
faap100 | yod1 | ENSDARP00000127337 | ENSDARP00000003565 | Si:dkey-57h18.1. | Ubiquitin thioesterase OTU1; Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of 'Lys-27'-, 'Lys-29'- and 'Lys-33'-linked polyubiquitin chains. A [...] | 0.911 |
ist1 | E9QDR5_DANRE | ENSDARP00000068086 | ENSDARP00000117734 | IST1 factor-associated with ESCRT-III. | Si:dkey-157g16.6. | 0.607 |
ist1 | chmp3 | ENSDARP00000068086 | ENSDARP00000055486 | IST1 factor-associated with ESCRT-III. | Charged multivesicular body protein 3; Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Involved in late stages of cytokinesis. Plays a role in en [...] | 0.973 |
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