STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
golga3Golgin A3. (1494 aa)    
Predicted Functional Partners:
SAMD4B
Si:ch1073-111c8.3.
      
 0.870
rnpc3
RNA-binding region-containing protein 3; Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprise less than 1% of all non-coding sequences.
   
  
 0.760
tmf1
TATA element modulatory factor 1.
   
  
 0.754
gorasp1a
Golgi reassembly-stacking protein 1a.
   
  
 0.751
gcc1
GRIP and coiled-coil domain-containing 1.
   
 
 0.741
tmem63c
Calcium permeable stress-gated cation channel 1; Acts as an osmosensitive calcium-permeable cation channel (By similarity). Required for the functional integrity of the kidney glomerular filtration barrier.
   
 
 0.725
blzf1
Basic leucine zipper nuclear factor 1.
      
 0.695
tcf25
Transcription factor 25 (basic helix-loop-helix).
   
  
 0.694
uso1
USO1 homolog, vesicle docking protein (Yeast).
   
 
 0.688
golga1
Golgin A1.
   
  
 0.669
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.