STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zbtb21Zinc finger and BTB domain-containing 21. (164 aa)    
Predicted Functional Partners:
znf532
Zinc finger protein 532.
      
 0.807
zbtb40
Zinc finger and BTB domain-containing 40.
      
 0.805
zzz3
Zinc finger, ZZ-type-containing 3.
   
  
 0.747
ripk4
Receptor-interacting serine-threonine kinase 4.
    
 
 0.688
trarg1a
Trafficking regulator of GLUT4 (SLC2A4) 1a.
      
 0.596
rpl36a
60S ribosomal protein L36a.
    
 
 0.585
ppp2r2bb
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 
 0.574
lpcat3
Lysophosphatidylcholine acyltransferase 3; Belongs to the membrane-bound acyltransferase family.
      
 0.569
znf217
Zinc finger protein 217.
      
 0.568
pdxkb
Novel protein similar to vertebrate pyridoxal (Pyridoxine, vitamin B6) kinase (PDXK).
      
 0.537
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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