STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
drgxDorsal root ganglia homeobox. (287 aa)    
Predicted Functional Partners:
rgmb
Repulsive guidance molecule BMP co-receptor b.
      
 0.719
adam19b
ADAM metallopeptidase domain 19b.
      
 0.670
frmpd2
FERM and PDZ domain-containing 2.
    
 
 0.663
zgc:114104
Zgc:114104.
      
 0.644
rgma
Repulsive guidance molecule BMP co-receptor a.
      
 0.585
pou4f1
POU domain protein.
   
 
 0.529
irx5a
Iroquois homeobox protein 5.
    
 
 0.500
dmrt3a
Doublesex- and mab-3-related transcription factor 3a; Probable transcription factor that plays a role in configuring the spinal circuits controlling motion in vertebrates. Involved in neuronal specification within specific subdivision of spinal cord neurons and in the development of a coordinated locomotor network controlling movements. May regulate transcription (By similarity); Belongs to the DMRT family.
    
 
 0.487
syt15
Synaptotagmin XV.
      
 0.479
scrt2
Scratch family zinc finger 2.
   
  
 0.478
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.