STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clockbClock circadian regulator b. (820 aa)    
Predicted Functional Partners:
cry3a
Cryptochrome circadian regulator 3a.
   
 
 0.961
cry1a
Cryptochrome circadian regulator 1a.
   
 
 0.934
cry1b
Cryptochrome circadian regulator 1b.
   
 
 0.923
cry4
Cryptochrome circadian regulator 4.
   
 
 0.918
cry2
Cryptochrome circadian regulator 2.
   
 
 0.903
cry3b
Cryptochrome circadian regulator 3b.
   
 
 0.895
arntl2
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
 
0.863
csnk1da
Casein kinase I isoform delta-A; Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates. Central component of the circadian clock. May act as a negative regulator of circadian rhythmicity by phosphorylating per1 and per2, which may lead to their degradation. Participates in wnt signaling (By similarity).
    
 
 0.823
cipca
CLOCK-interacting pacemaker a.
    
 
 0.801
arntl1b
Aryl hydrocarbon receptor nuclear translocator-like 1b.
   
 
0.773
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.