STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgap23bRho GTPase-activating protein 23b. (1134 aa)    
Predicted Functional Partners:
ccdc51
Coiled-coil domain-containing 51.
      
 0.900
znf541
Zinc finger protein 541.
      
 0.833
arhgef40
Rho guanine nucleotide exchange factor (GEF) 40.
      
 0.686
iqgap3
IQ motif-containing GTPase-activating protein 3.
    
 
 0.620
arhgef2
Rho/rac guanine nucleotide exchange factor (GEF) 2.
    
 
 0.574
yrk
Tyrosine-protein kinase.
   
  
 0.546
hmcn2
Hemicentin 2.
      
 0.482
rasgrp3
RAS guanyl-releasing protein 3 (calcium and DAG-regulated).
      
 0.480
sh3gl3b
SH3-domain GRB2-like 3b.
      
 0.479
antxr1c
ANTXR cell adhesion molecule 1c.
      
 0.479
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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