STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sftpbaSurfactant protein Ba. (249 aa)    
Predicted Functional Partners:
gba
Glucosylceramidase.
   
 0.913
gpr37b
G protein-coupled receptor 37b.
     
  0.900
gpr37l1a
G protein-coupled receptor 37-like 1a; Belongs to the G-protein coupled receptor 1 family.
     
  0.900
aifm5
Apoptosis-inducing factor mitochondria-associated 5.
      
 0.873
psap
Prosaposin; Prosaposin: Behaves as a myelinotrophic and neurotrophic factor, these effects are mediated by its G-protein-coupled receptors, GPR37 and GPR37L1, undergoing ligand-mediated internalization followed by ERK phosphorylation signaling.
  
  
 
0.810
chid1
Chitinase domain-containing protein 1.
     
  0.750
coasy
CoA synthase.
      
 0.745
dhcr24
24-dehydrocholesterol reductase.
      
 0.716
aifm3
Apoptosis-inducing factor mitochondria-associated 3.
      
 0.540
galcb
Galactosylceramidase b.
    
 
 0.520
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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