STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col17a1aCollagen, type XVII, alpha 1a. (1408 aa)    
Predicted Functional Partners:
mipol1
Mirror-image polydactyly 1.
      
 0.665
itgb4
Integrin beta.
   
 
 0.656
kif25
Kinesin family member 25; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.644
rai14
Retinoic acid-induced 14.
    
 
 0.608
col16a1
Collagen, type XVI, alpha 1.
  
  
0.589
col5a3b
Collagen, type V, alpha 3b.
  
  
0.577
col6a2
Collagen, type VI, alpha 2.
  
0.573
tssk6
Testis-specific serine kinase 6; Belongs to the protein kinase superfamily.
    
 
 0.567
plod2
Procollagen lysine 2-oxoglutarate 5-dioxygenase 2b isoform.
   
 0.562
plod1a
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
 0.562
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.