STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nipal3NIPA-like domain-containing 3. (387 aa)    
Predicted Functional Partners:
fam131c
Family with sequence similarity 131 member C.
      
 0.584
ccdc90b
Coiled-coil domain-containing 90B.
      
 0.583
txndc16
Thioredoxin domain-containing 16.
      
 0.579
zbtb40
Zinc finger and BTB domain-containing 40.
      
 0.571
mrpl53
Mitochondrial ribosomal protein L53.
      
 0.558
stxbp4
Syntaxin-binding protein 4.
      
 0.513
khk
Ketohexokinase.
      
 0.509
nme6
Nucleoside diphosphate kinase 6; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
      
 0.479
nfyc
Nuclear transcription factor Y, gamma.
      
 0.418
tm2d1
TM2 domain-containing protein 1.
   
  
 0.415
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.