STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRMD7Si:ch211-243g6.3. (324 aa)    
Predicted Functional Partners:
caska
Calcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family.
    
 
 0.928
gpr143
G protein-coupled receptor 143.
      
 0.833
slc38a8a
Solute carrier family 38 member 8a.
   
  
 0.744
ptprjb.1
Protein tyrosine phosphatase receptor type Jb, tandem duplicate 1.
 
    
 0.740
ptprjb.2
Protein tyrosine phosphatase receptor type Jb, tandem duplicate 2.
 
    
 0.689
ptpn2b
Tyrosine-protein phosphatase non-receptor type.
 
      0.628
prss56
Serine protease 56; Belongs to the peptidase S1 family.
      
 0.596
slc4a11
Solute carrier family 4 member 11.
      
 0.582
crybb3
Crystallin, beta B3; Belongs to the beta/gamma-crystallin family.
      
 0.580
ptpn2a
Tyrosine-protein phosphatase non-receptor type.
 
      0.558
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.