STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spsb3bSplA/ryanodine receptor domain and SOCS box-containing 3b. (250 aa)    
Predicted Functional Partners:
ankrd29
Ankyrin repeat domain-containing protein 29.
      
 0.836
klhl38b
Kelch-like family member 38b.
      
 0.807
klhl38a
Kelch-like protein 38.
      
 0.800
elovl8a
Elongation of very long chain fatty acids protein.
   
  
 0.746
elovl8b
Elongation of very long chain fatty acids protein.
   
  
 0.746
ky
Kyphoscoliosis peptidase.
      
 0.742
LOC100148581
Si:ch73-55i23.1.
      
 0.730
afp4
Type IV antifreeze protein A.
      
 0.722
ankrd37
Ankyrin repeat domain 37.
      
 0.717
LOC568656
Antifreeze protein type IV.
      
 0.717
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.