STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ca12Carbonic anhydrase XII; Belongs to the alpha-carbonic anhydrase family. (257 aa)    
Predicted Functional Partners:
afap1l1a
Actin filament-associated protein 1-like 1; May be involved in podosome and invadosome formation.
      
 0.664
atp10b
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
      
 0.630
edrf1
Erythroid differentiation regulatory factor 1.
      
 0.625
ube2d4
Ubiquitin-conjugating enzyme E2D 4 (putative); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.617
prr16
Proline-rich 16.
      
 0.603
phyhip
Fibronectin type-III domain-containing protein.
    
 
 0.603
rpf2
Ribosome production factor 2 homolog.
   
 
 0.593
syt17
Synaptotagmin XVII.
   
  
 0.573
nxph2a
Neurexophilin; May be signaling molecules that resemble neuropeptides.
   
  
 0.572
tmem154
Transmembrane protein 154.
      
 0.555
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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