STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col4a4Collagen, type IV, alpha 4. (1670 aa)    
Predicted Functional Partners:
itga3b
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
   
 0.774
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.709
itga6a
Integrin, alpha 6a; Belongs to the integrin alpha chain family.
    
 0.699
itgb3b
Integrin beta; Belongs to the integrin beta chain family.
   
 0.676
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
 0.674
itga2.2
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.
   
 
 0.672
itgb3a
Integrin beta; Belongs to the integrin beta chain family.
   
 0.671
itgb4
Integrin beta.
   
 0.671
itgb7
Integrin beta; Belongs to the integrin beta chain family.
   
 0.671
itgb1a
Integrin beta; Belongs to the integrin beta chain family.
   
 0.669
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.