STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sptbn5Spectrin, beta, non-erythrocytic 5. (4140 aa)    
Predicted Functional Partners:
sptan1
Spectrin alpha, non-erythrocytic 1.
   
0.822
zdhhc23b
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.804
dnah12
Dynein, axonemal, heavy chain 12.
    
 
 0.729
ank1b
Ankyrin 1, erythrocytic b.
   
 0.687
sfi1
SFI1 centrin-binding protein.
      
 0.648
arfgef1
ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited).
      
 0.644
sptbn1
Spectrin beta chain; Belongs to the spectrin family.
     
0.637
arf1
ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family.
    
 0.619
uso1
USO1 homolog, vesicle docking protein (Yeast).
     
 0.587
myo5c
Myosin VC; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 
 0.569
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.