STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nuak1bNUAK family, SNF1-like kinase, 1b. (613 aa)    
Predicted Functional Partners:
nt5dc3
5'-nucleotidase domain-containing 3.
      
 0.836
samm50
Sorting and assembly machinery component 50 homolog A; May play a role in the maintenance of the structure of mitochondrial cristae; Belongs to the SAM50/omp85 family.
      
 0.719
itgbl1
Integrin, beta-like 1.
      
 0.661
api5
Apoptosis inhibitor 5.
      
 0.619
pik3c2a
Phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha; Belongs to the PI3/PI4-kinase family.
      
 0.581
LOC101886422
ADAM metallopeptidase with thrombospondin type 1 motif, 14.
      
 0.567
nol4lb
Nucleolar protein 4-like b.
   
  
 0.560
nfybb
Nuclear transcription factor Y, beta b.
      
 0.544
cables2a
Cdk5 and Abl enzyme substrate 2a; Belongs to the cyclin family.
      
 0.544
osbp2
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.540
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.