STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thbs4aThrombospondin 4a. (950 aa)    
Predicted Functional Partners:
cd36
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
    
 0.901
sdc4
Syndecan 4.
     
  0.900
LOC100332300
Gremlin 1a, DAN family BMP antagonist.
    
 
 0.836
ncam3
Neural cell adhesion molecule 3.
    
 
 0.762
ucmab
Unique cartilage matrix-associated protein C-terminal fragment; May be involved in the negative control of osteogenic differentiation of osteochondrogenic precursor cells in peripheral zones of fetal cartilage and at the cartilage-bone interface. Belongs to the UCMA family.
      
 0.747
itgb4
Integrin beta.
   
 0.686
LOC108181664
Hyaluronidase.
    
 
 0.682
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.677
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.674
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.672
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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