STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
il16Interleukin 16. (1521 aa)    
Predicted Functional Partners:
si:ch73-7i4.3
Si:ch73-7i4.3.
     
  0.900
cd4-1
CD4-1 molecule.
    
  0.900
casp3a
Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
     
  0.750
metrnlb
Meteorin-like, glial cell differentiation regulator b.
    
 
 0.750
syngr3b
Synaptogyrin.
      
 0.631
syngr1a
Synaptogyrin.
      
 0.619
il17d
Interleukin 17_4.
   
  
 0.565
il6
Interleukin 6 (interferon, beta 2).
      
 0.562
syngr3a
Synaptogyrin.
      
 0.558
syngr2b
Synaptogyrin.
      
 0.544
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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