STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spats1Uncharacterized protein. (231 aa)    
Predicted Functional Partners:
tcte1
T-complex-associated-testis-expressed 1.
   
  
 0.840
mospd1
Motile sperm domain-containing 1.
      
 0.832
fbxo36b
F-box protein 36b.
      
 0.832
nbl1
Neuroblastoma suppressor of tumorigenicity 1; May act as a tumor suppressor; Belongs to the DAN family.
      
 0.800
RERG
Si:cabz01085950.1.
      
 0.744
dnajc25
DnaJ (Hsp40) homolog, subfamily C, member 25.
      
 0.743
pih1d2
PIH1 domain-containing protein 2; Belongs to the PIH1 family.
      
 0.740
parp12a
Poly (ADP-ribose) polymerase family, member 12a.
      
 0.720
gsg1l
Germ cell-specific gene 1-like protein; As a component of the AMPAR complex, modifies AMPA receptor (AMPAR) gating.
      
 0.690
cfap53
Cilia- and flagella-associated protein 53; May play a role in the beating of primary cilia and thereby be involved in the establishment of organ laterality during embryogenesis; Belongs to the CFAP53 family.
      
 0.670
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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