STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgap27Rho GTPase-activating protein 27. (970 aa)    
Predicted Functional Partners:
ankdd1a
Ankyrin repeat and death domain-containing 1A.
    
 
 0.734
RASSF4
Ras association domain family member 4.
   
  
 0.729
TMEM151A
Transmembrane protein 151A.
      
 0.722
LOC101882069
Transmembrane protein 151A.
      
 0.722
sowahd
Sosondowah ankyrin repeat domain family d.
    
 
 0.722
Q1L949_DANRE
Si:ch211-250g4.3.
      
 0.720
tmem119b
Transmembrane protein 119b.
      
 0.719
spa17
Sperm autoantigenic protein 17.
      
 0.671
samd10b
Sterile alpha motif domain-containing 10b.
      
 0.670
LOC110438229
Syncollin, tandem duplicate 1.
      
 0.669
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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