STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
agrnAgrin. (1926 aa)    
Predicted Functional Partners:
musk
Muscle, skeletal, receptor tyrosine kinase.
    
 
 0.996
dag1
Dystroglycan 1.
   
 0.994
lrp4
Low density lipoprotein receptor-related protein 4.
    
 
 0.991
rapsn
Receptor-associated protein of the synapse, 43kD.
      
 0.977
dok7
Docking protein 7.
      
 0.964
tmprss15
Transmembrane serine protease 15; Belongs to the peptidase S1 family.
   
 
 0.877
hspg2
Heparan sulfate proteoglycan 2.
      
0.876
fktn
Fukutin.
      
 0.872
pomt1
Protein O-mannosyl-transferase 1; Transfers mannosyl residues to the hydroxyl group of serine or threonine residues. Coexpression of both POMT1 and POMT2 is necessary for enzyme activity, expression of either POMT1 or POMT2 alone is insufficient; Belongs to the glycosyltransferase 39 family.
      
 0.849
nid2b
Nidogen 2b (osteonidogen).
   
 
 0.809
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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