STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stx8Stx8 protein. (235 aa)    
Predicted Functional Partners:
vti1b
Vesicle transport through interaction with t-SNAREs homolog 1B (Yeast).
   
 0.998
vamp8
Vesicle-associated membrane protein 8 (Endobrevin).
    
 0.994
stx7l
Syntaxin 7-like; Belongs to the syntaxin family.
    
 0.994
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.991
ykt6
Synaptobrevin homolog YKT6; Vesicular soluble NSF attachment protein receptor (v-SNARE) mediating vesicle docking and fusion to a specific acceptor cellular compartment. Functions in endoplasmic reticulum to Golgi transport; as part of a SNARE complex composed of GOSR1, GOSR2 and STX5. Functions in early/recycling endosome to TGN transport; as part of a SNARE complex composed of BET1L, GOSR1 and STX5. Has a S-palmitoyl transferase activity.
   
 0.990
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.968
stx12
Syntaxin 12; Belongs to the syntaxin family.
   
 0.967
stx18
Syntaxin-18; Syntaxin that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER. Belongs to the syntaxin family.
   
 0.962
vamp4
Vesicle-associated membrane protein 4.
   
 0.940
stx5a
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.938
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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