STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pnisrPNN-interacting serine/arginine-rich protein. (819 aa)    
Predicted Functional Partners:
luc7l3
LUC7-like 3 pre-mRNA-splicing factor.
   
  
 0.989
pnn
Pinin, desmosome-associated protein.
   
 
 0.911
slc35a4
Probable UDP-sugar transporter protein SLC35A4.
      
 0.864
srsf11
Serine and arginine-rich-splicing factor 11.
   
 
 0.810
srek1
Splicing regulatory glutamine/lysine-rich protein 1.
   
 
 0.796
scaf11
SR-related CTD-associated factor 11.
   
  
 0.786
F1REM4_DANRE
Si:ch211-114c17.1.
   
  
 0.768
prpf39
Pre-mRNA-processing factor 39; Involved in pre-mRNA splicing; Belongs to the PRP39 family.
   
  
 0.768
ttc14
Tetratricopeptide repeat domain 14.
   
   0.766
tmem184c
Transmembrane protein 184C.
      
 0.763
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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