STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
itih3bInter-alpha-trypsin inhibitor heavy chain 3b. (892 aa)    
Predicted Functional Partners:
hpcal4
Hippocalcin-like 4.
    
 
 0.762
rnpep
Arginyl aminopeptidase (Aminopeptidase B).
    
 
 0.744
MGAT5B
Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B.
    
 
 0.744
itih3a
Inter-alpha-trypsin inhibitor heavy chain 3a.
 
 
0.715
itih1
Inter-alpha-trypsin inhibitor heavy chain 1.
 
 
0.663
aacs
Acetoacetyl-CoA synthetase; Activates acetoacetate to acetoacetyl-CoA; Belongs to the ATP-dependent AMP-binding enzyme family.
      
 0.660
nek4
NIMA-related kinase 4.
 
  
 
 0.649
ephx2
Epoxide hydrolase 2, cytoplasmic.
   
 
 0.627
RASGRF1
Si:ch211-234p18.3.
    
 
 0.605
tgm1
Transglutaminase 1, K polypeptide.
    
 
 0.552
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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