STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
obscnbObscurin, cytoskeletal calmodulin and titin-interacting RhoGEF b. (1660 aa)    
Predicted Functional Partners:
obscna
Obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF a.
 
   
0.923
neb
Nebulin.
   
 
 0.875
ank3a
Ankyrin 3a.
   
 
 0.867
ank1b
Ankyrin 1, erythrocytic b.
   
 
 0.864
ank2b
Ankyrin 2b, neuronal.
   
 
 0.860
cmya5
Cardiomyopathy associated 5 like.
   
 
 0.837
ttn.1
Titin, tandem duplicate 1.
   
  
0.807
kctd6b
BTB/POZ domain-containing protein KCTD6; Probable substrate-specific adapter of a cullin-containing E3 ubiquitin-protein ligase complex mediating the ubiquitination and subsequent proteasomal degradation of target proteins.
    
 
 0.747
capn3a
Calpain 3a, (p94); Belongs to the peptidase C2 family.
   
 
 0.717
tcap
Titin-cap (telethonin).
   
 
 0.716
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.