STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rph3abRabphilin 3A homolog (mouse), b. (589 aa)    
Predicted Functional Partners:
rab3ab
RAB3A, member RAS oncogene family, b.
   
 
 0.787
rab3aa
RAB3A, member RAS oncogene family, a.
   
 
 0.786
dennd5a
DENN/MADD domain-containing 5A.
      
 0.744
rab3b
RAB3B, member RAS oncogene family.
   
 
 0.709
lin7b
Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.
      
 0.669
rab3da
RAB3D, member RAS oncogene family, a.
   
 
 0.646
lin7a
Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.
      
 0.541
rab11fip2
RAB11 family-interacting protein 2 (class I).
      
 0.480
zmp:0000001327
Sortilin related VPS10 domain containing receptor 3.
      
 0.480
rab21
RAB21, member RAS oncogene family.
      
 0.457
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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