STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
caln1Calneuron 1. (260 aa)    
Predicted Functional Partners:
gstcd
Glutathione S-transferase, C-terminal domain-containing.
      
 0.803
galnt17
Polypeptide N-acetylgalactosaminyltransferase.
      
 0.744
ywhag1
14-3-3 protein gamma-1; Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner (By similarity).
   
 
 0.672
hip1
Huntingtin-interacting protein 1.
      
 0.670
scgn
Secretagogin.
      
 0.651
wdr90
WD repeat domain 90.
    
 
 0.541
auts2a
Activator of transcription and developmental regulator AUTS2 a.
      
 0.497
caska
Calcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family.
    
 
 0.492
caskb
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 
 0.492
chpf2
Hexosyltransferase.
      
 0.481
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.