STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ralgapa1Ral GTPase-activating protein, alpha subunit 1 (catalytic). (2152 aa)    
Predicted Functional Partners:
gpn1
GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.
      
 0.792
INSM2
INSM transcriptional repressor 2.
 
    
 0.756
fam49a
Family with sequence similarity 49 member A.
      
 0.743
esyt3
Extended synaptotagmin-like protein 3.
      
 0.731
mark2a
Non-specific serine/threonine protein kinase.
      
 0.670
eapp
E2f-associated phosphoprotein.
      
 0.669
sptssa
Serine palmitoyltransferase small subunit A; Stimulates the activity of serine palmitoyltransferase (SPT). The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference (By similarity). Belongs to the SPTSS family. SPTSSA subfamily.
      
 0.662
arhgef7a
Rho guanine nucleotide exchange factor (GEF) 7a.
      
 0.644
rhogd
Ras homolog gene family, member Ga.
    
 
 0.620
slc12a8
Solute carrier family 12 member 8.
      
 0.620
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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