STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab3bRAB3B, member RAS oncogene family. (217 aa)    
Predicted Functional Partners:
susd1
Sushi domain-containing 1.
      
 0.742
rims2a
Regulating synaptic membrane exocytosis 2a.
    
 
 0.740
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 
 0.735
rph3aa
Rabphilin 3A homolog (mouse), a.
   
 
 0.710
rph3ab
Rabphilin 3A homolog (mouse), b.
   
 
 0.709
tjap1
Tight junction-associated protein 1 (peripheral).
      
 0.646
mitd1
MIT, microtubule-interacting and transport, domain-containing 1.
   
  
 0.609
chm
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.604
prrc2c
Proline-rich coiled-coil 2C.
      
 0.585
pigr
Polymeric immunoglobulin receptor.
    
 
 0.570
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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