STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc12a5bSolute carrier family 12 member 5b. (1146 aa)    
Predicted Functional Partners:
slc35c2
Solute carrier family 35 member C2.
   
  
 0.716
ppil4
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
   
  
 0.652
ctxn1-2
Cortexin 1.
   
  
 0.629
ctxn1
Uncharacterized protein.
   
  
 0.628
slc15a4
Solute carrier family 15 member 4.
   
 
 0.607
slc38a6
Probable sodium-coupled neutral amino acid transporter 6; Probable sodium-dependent amino acid/proton antiporter, could be a neuronal transporter for glutamate. Belongs to the amino acid/polyamine transporter 2 family.
   
  
 0.588
fn3krp
Fructosamine 3 kinase-related protein; Belongs to the fructosamine kinase family.
   
  
 0.586
slc52a3
Solute carrier family 52, riboflavin transporter, member 3-A; Plasma membrane transporter mediating the uptake by cells of the water soluble vitamin B2/riboflavin that plays a key role in biochemical oxidation-reduction reactions of the carbohydrate, lipid, and amino acid metabolism.
      
 0.567
zmat4b
Zinc finger, matrin-type 4b.
   
  
 0.557
wnk1b
WNK lysine deficient protein kinase 1b.
    
 
 0.552
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.