STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q5W_01030GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (894 aa)    
Predicted Functional Partners:
Q5W_01035
Poly-beta-hydroxybutyrate polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.811
Q5W_01025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.688
Q5W_01040
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.631
Q5W_05390
Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.550
Q5W_01050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.548
cobB
NAD-dependent deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sirtuin family. Class III subfamily.
  
  
 0.533
Q5W_01020
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.518
Q5W_18465
DeoR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.482
Q5W_15095
Malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.479
Q5W_19395
Malate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.479
Your Current Organism:
Hydrogenophaga sp. PBC
NCBI taxonomy Id: 795665
Other names: H. sp. PBC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.