STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q5W_08030Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (380 aa)    
Predicted Functional Partners:
Q5W_08035
Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.994
Q5W_03970
Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.965
Q5W_08485
Multidrug efflux RND transporter permease subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.959
macB
Macrolide ABC transporter permease/ATP-binding protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.937
Q5W_08480
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 
0.909
Q5W_08280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.853
Q5W_08490
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.853
Q5W_07555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.727
Q5W_13425
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.727
Q5W_08160
Multidrug efflux RND transporter permease subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.701
Your Current Organism:
Hydrogenophaga sp. PBC
NCBI taxonomy Id: 795665
Other names: H. sp. PBC
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