Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Q5W_25035Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)    
Predicted Functional Partners:
Q5W_25030
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.824
Q5W_14890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.704
Q5W_25025
DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.693
Q5W_03755
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
Q5W_12870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
Q5W_11920
PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
Q5W_08430
Phasin (PHA-granule associated protein); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.646
Q5W_24045
Branched-chain amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.646
Q5W_15870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.645
Q5W_06615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.621
Your Current Organism:
Hydrogenophaga sp. PBC
NCBI taxonomy Id: 795665
Other names: H. sp. PBC
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